| Jim Falls | Hydroelectric | Northern States Power Co - Minnesota | 59.8 MW |
| Wissota | Hydroelectric | Northern States Power Co - Minnesota | 39.4 MW |
| Cornell | Hydroelectric | Northern States Power Co - Minnesota | 35.3 MW |
| Holcombe | Hydroelectric | Northern States Power Co - Minnesota | 33.9 MW |
| Prairie Du Sac | Hydroelectric | Wisconsin Power & Light Co | 33.4 MW |
| St Croix Falls | Hydroelectric | Northern States Power Co - Minnesota | 23.2 MW |
| Flambeau Hydroelectric Station | Hydroelectric | Dairyland Power Coop | 22 MW |
| Chippewa Falls | Hydroelectric | Northern States Power Co - Minnesota | 21.6 MW |
| Petenwell | Hydroelectric | Wisconsin River Power Company | 20 MW |
| Grandfather Falls | Hydroelectric | Wisconsin Public Service Corp | 17.2 MW |
| Castle Rock | Hydroelectric | Wisconsin River Power Company | 15 MW |
| Dells | Hydroelectric | Northern States Power Co - Minnesota | 12.3 MW |
| Kilbourn | Hydroelectric | Wisconsin Power & Light Co | 9.7 MW |
| Twin Falls (WI) | Hydroelectric | Wisconsin Electric Power Co | 9.2 MW |
| Little Quinnesec Falls Hydro Project | Hydroelectric | Eagle Creek Renewable Energy, LLC | 9 MW |
| New Badger | Hydroelectric | City of Kaukauna | 8.2 MW |
| Wisconsin Rapids | Hydroelectric | Consolidated Water Power Co | 8.1 MW |
| Big Falls | Hydroelectric | Northern States Power Co - Minnesota | 7.7 MW |
| Du Bay | Hydroelectric | Consolidated Water Power Co | 7.2 MW |
| High Falls (WI) | Hydroelectric | Wisconsin Public Service Corp | 7 MW |
| Port Edwards Mill | Hydroelectric | Domtar Industries Inc | 6.7 MW |
| Caldron Falls | Hydroelectric | Wisconsin Public Service Corp | 6.4 MW |
| Combined Locks | Hydroelectric | City of Kaukauna | 6.2 MW |
| Cedar Falls (WI) | Hydroelectric | Northern States Power Co - Minnesota | 6 MW |
| Biron | Hydroelectric | Consolidated Water Power Co | 5.8 MW |
| Menomonie | Hydroelectric | Northern States Power Co - Minnesota | 5.4 MW |
| Wausau | Hydroelectric | Wisconsin Public Service Corp | 5.4 MW |
| Brule | Hydroelectric | Wisconsin Electric Power Co | 5.3 MW |
| Whiting | Hydroelectric | Consolidated Water Power Co | 5.1 MW |
| Kaukauna City Hydro | Hydroelectric | City of Kaukauna | 4.8 MW |
| Stevens Point | Hydroelectric | Consolidated Water Power Co | 4.8 MW |
| Alexander | Hydroelectric | Wisconsin Public Service Corp | 4.2 MW |
| Sandstone Rapids | Hydroelectric | Wisconsin Public Service Corp | 3.8 MW |
| Pine | Hydroelectric | Wisconsin Electric Power Co | 3.6 MW |
| Johnson Falls | Hydroelectric | Wisconsin Public Service Corp | 3.4 MW |
| LAC Courte Oreilles Hydroelect | Hydroelectric | Renewable World Energies LLC | 3.4 MW |
| Ladysmith Dam | Hydroelectric | Northern States Power Co - Minnesota | 3.4 MW |
| Little Chute | Hydroelectric | City of Kaukauna | 3.3 MW |
| Tomahawk | Hydroelectric | Wisconsin Public Service Corp | 2.6 MW |
| Apple River | Hydroelectric | Northern States Power Co - Minnesota | 2.4 MW |
| Rapide Croche | Hydroelectric | City of Kaukauna | 2.4 MW |
| Merrill | Hydroelectric | Wisconsin Public Service Corp | 2.3 MW |
| Appleton | Hydroelectric | Wisconsin Electric Power Co | 2.2 MW |
| Kimberly Mill | Hydroelectric | City of Kaukauna | 2.1 MW |
| Park Mill | Hydroelectric | Eagle Creek Renewable Energy, LLC | 2.1 MW |
| Oconto Falls Lower | Hydroelectric | Eagle Creek Renewable Energy, LLC | 2 MW |
| Hat Rapids | Hydroelectric | Wisconsin Public Service Corp | 1.7 MW |
| Saxon Falls | Hydroelectric | Northern States Power Co - Minnesota | 1.6 MW |
| Flambeau Crowley Rapids Project | Hydroelectric | Renewable World Energies LLC | 1.5 MW |
| Arpin Dam | Hydroelectric | Renewable World Energies LLC | 1.4 MW |
| Thornapple | Hydroelectric | Northern States Power Co - Minnesota | 1.4 MW |
| Potato Rapids | Hydroelectric | Wisconsin Public Service Corp | 1.3 MW |
| Clam River Dam | Hydroelectric | Renewable World Energies LLC | 1.2 MW |
| Flambeau Lower Project | Hydroelectric | Renewable World Energies LLC | 1.2 MW |
| Trego | Hydroelectric | Northern States Power Co - Minnesota | 1.2 MW |
| Domtar Paper Company Rothschild | Hydroelectric | Domtar Paper Company Rothschild | 1.1 MW |
| Oconto Falls Upper | Hydroelectric | Eagle Creek Renewable Energy, LLC | 1.1 MW |
| Danbury Dam | Hydroelectric | Renewable World Energies LLC | 1 MW |
| Stiles | Hydroelectric | Oconto Electric Cooperative | 1 MW |
| White River (WI) | Hydroelectric | Northern States Power Co - Minnesota | 1 MW |
| Barron | Hydroelectric | City of Barron - (WI) | 0.1 MW |